Okay guys I have come up with what I think would be a pretty good basic story line based off of everyone's ideas. Feel free to critique/reject/change my ideas too.

I would like to add that while my storyline seems laden with straight forward and obvious SAoVQ references I think we can make them truly REFERENCES in game and not make the game actually revolve entirely around SAoVQ jokes. So instead of having a guy with an AA face, he'll just be a normal person named "Shobon" or whatever. As for injokes inside of the text here is an example I thought of: "Ugh I took the wrong bento box to school again. God I hate my sister and her pink bento boxes." Then it can actually be tied in by having a potential love interest poke fun at him. It could be taken even further with the tsundere going "Ohoho, only two kotoba? Pathetic. You call yourself a man?" What do you think about this style?

Now for the basic storyline (with possibly too much detail and chaos, feel free to reorganize summarize this on the wiki or here maybe):
VIPPER is a normal student in Saitama, Japan. The game starts when you are awoken by your older sister (who is somehow not related to you and your parents are dead). The beginning scene is all about introducing you as essentially what a VIPPER on this board would be: shy, internet-saavy, not entirely comfortable with himself. He would visit a site called BAoBQ which is essentially SAoVQ/2ch but this makes the ingame references NOT obvious to the character. There is then a regular first day at school where you are introduced to his best friend who is also somewhat nerdy.

After the first day at school VIPPER is somewhat sadden by his inability to socialize and be comfortable with himself. That night there is a little bit of internet browsing in which he contemplates on the great times he used to have on his favorite website Pchan five years ago and how he wishes he could replicate the feelings he had then in real life now. He sees a bright light from outside his window and notices a meteor shower coming in right outside his backyard (which is a somewhat expansive field). He is amazed and feels somehow inspired to make a commitment to change himself and live life to the fullest. At this point you choose either I want to find love or I want to become known by all or something like that. Either of these options will give you points towards going down the romance path or the kikkoman path. There will be a certain number of choices that will send you down one path or the other according to how many points you have a decent bit into the game. Love interests, different endings can all be set up on a point system in which certain choices give more or less points for certain categories.

VIPPER awakens excited for a new day at school. He has a new attitude and his friend notices this at school. Sees there is a transfer student day coming up the next day and sees that as a chance to meet new people and utilize his new attitude on life. This night he posts excitedly on his text board and you get to once again make a decision on what he posts leading him towards KIKKOPATH or ROMANCEPATH.

Transfer student day arrives and this introduces four (or three maybe) new characters. Three of these are girls and potential love interests. I have no idea what these characters will be like yet but I think having them be usual (one rei, one tsundere, etc.) might be a good plan and then we can add quirky details that make them interesting. Then there will be a loner guy who is essentially going to be your rival if you choose the kikkopath. After their introduction to the class you listen to what they have to say and choose where you want to go for lunch accordingly. Something I thought funny to say here would be, in response to your friend noting a cute girl, "As for me, it's ____" You will meet one of the three girls and run into the loner on the way. The loner will be stoic and offputting and you can either be a jerk to him or just brush him off. Being a jerk to him will give you a significant leaning towards kikkopath and this is the last time to make a choice between kikkopath and romancepath. You have a talk with one of the girls and start to develop relationship points with them.

You have many opportunities to develop relationship points throughout the game by spending time with them each girl should have an ending in the romance path and then maybe a bonus ending for one or two if you get enough points. On this night you have a chance to talk to your sister about all this and get excited for your new lifestyle. You can get some sister points here which could lead to a special ending in which you end up being romantic with your sister and living with her in the end.